Matthew Buffington: You're listening to  NASA in Silicon Valley, episode 70, and for
  the intro I have Abby with me here again.
  Abby Tabor (Host): Hello, hello!
  Matthew Buffington: This is a slightly interesting  episode just for the sake that when we planned
  to recording this, I got horrifically ill,  and Abby jumped in at the last minute to go
  ahead and do this recording.
  Host: That's right.
  Matthew Buffington: So Abby, tell us about  the conversation that you had.
  Host: Alright, well, it turned out to be very  interesting!
  I met with Sylvain Costes.
  He is the manager of the GeneLab project,  here at Ames.
  So you know how NASA does a lot of biosciences.
  We do biology experiments up on the space  station.
  So when those experiments end, the science  doesn't end because all that data goes into
  a repository, which is open to the public,  it's open access, for any researchers to
  use.
  And right now they're developing tools,  and really building a system around it, where
  people can come analyze this space biology  data that NASA helped produce, and looking
  for discoveries that they can make within  it themselves.
  Matthew Buffington: Oh wow!
  Host: And this is for researchers, if that's  your research, or for citizen scientists who
  may be interested, they'll be able to explore  as well, and getting more out of the data
  than ever.
  What Sylvain describes it as is NASA as the  custodian of knowledge about how life is effected
  in space.
  Matthew Buffington: Sounds super exciting!
  So before jump on into it, a reminder for  folks listening, we have a phone number, (650)
  604-1400.
  Give us a call and leave a message, and we'll  try to add that into future episodes.
  If you want to be digital, we are on all the  social media platforms, we're using the
  hashtag #NASASiliconValley.
  We are a NASA podcast, but we are not the  only NASA podcast!
  I'll give a quick little shout out to some  of our friends over at headquarters, who do
  Gravity Assist.
  There's also another weekly podcast called  This Week at NASA.
  And then of course, our friends over in JSC,  over at the Johnson Space Center, they have
  Houston, We Have a Podcast.
  But for today…
  Host: … Let's listen to Sylvain Costes.
  [Music]
  Host: Hey, Sylvain, thanks for coming in.
  Sylvain Costes: Thank you for having me.
  Host: I'm excited to hear about your work  a little bit.
  Usually we start this off by learning about  you and your background and how did you end
  up at NASA.
  Where do you come from originally?
  Sylvain Costes: Sure.
  I was born in France.
  I went through physics and mathematics training  in France in college.
  Host: Cool.
  Sylvain Costes: Eventually I transferred to  -- I did an exchange at Texas A&M University.
  From there, I liked the American education.
  Host: Yeah?
  Sylvain Costes: So I decided to go for a PhD.
  After a Masters at Texas A&M, I did a PhD  at UC Berkeley and spent some time at NCI
  National Cancer Institute, and then became  an independent investigator at Lawrence Berkeley
  National Lab, which is a DOE lab.
  I joined NASA only last December in 2016.
  Host: So you're pretty new.
  You're even newer than I am to NASA.
  Interesting.
  Sylvain Costes: Good.
  Host: And I lived in Paris for eight years,  so we have something else in common.
  Sylvain Costes: Yeah.
  [Foreign language].
  Host: No, no, no.
  [Foreign language].
  Let's continue in English.
  From France, what part of France?
  Sylvain Costes: It's hard to tell.
  I was born in Bourges, which is one of the  center cities.
  But I moved, I think, 20 times.
  By the age of 20, I had moved 20 times in  France.
  Host: Oh my gosh.
  Sylvain Costes: I don't have any really -- City,  I would say I'm from the south.
  That's really where my family is from.
  So Toulouse would be --
  Host: I see.
  Yeah.
  Sylvain Costes: The real city is called Rodez,  but I don't really feel like I'm --
  Host: But everyone knows Toulouse.
  Sylvain Costes: Yeah, I'm just French in general.
  Host: Right, okay.
  Sylvain Costes: I've been everywhere in France.
  Host: So you're used to moving around, it  sounds like.
  Sylvain Costes: That's right.
  Host: From France to Texas to California,  you've been all over.
  Sylvain Costes: Yeah.
  Host: Eventually that led you to NASA.
  So you're a biologist, is that right?
  Sylvain Costes: No, I'm a physicist.
  Host: A physicist.
  Sorry.
  Sylvain Costes: My PhD is in nuclear engineering.
  Host: Oh my gosh.
  Sylvain Costes: I used to do -- In my Masters,  I was doing nuclear reactor design, so a lot
  of neutronics.
  And then in nuclear engineering, there is  a section called health physics, which is
  understanding how radiation impacts people  as life; so like how you can get cancer from
  radiation, the risk of ionizing radiation.
  And so I got into this.
  And part of that is called medical physics,  which is understanding how radiation can be
  used to treat cancer
  Host: That's the connection between physics  and cancer reduction.
  Sylvain Costes: That's right.
  Host: Yeah.
  Sylvain Costes: And then little by little,  I left the physics world to move more and
  more towards biology.
  Being a physicist, I've done a lot of -- I've  used a lot of the physics knowledge, so mathematics
  and modeling, into understanding biological  processes.
  Until last year, very much focused on radiation.
  And so the connection with NASA there was  that there is cosmic radiation that astronauts
  get exposed to.
  So I've been studying their impact on humans  for a long time.
  Host: Right.
  Radiation is a big challenge for space exploration.
  Sylvain Costes: It's a big one.
  Microgravity and radiation are the two big  ones.
  Right?
  Host: Right.
  Sylvain Costes: Now at GeneLab, I'm really  emphasizing everything.
  Radiation is just one small aspect of what  we're working on.
  We're really looking at the full response  of the human, and life in general, in terms
  of living in space.
  Host: Right.
  Sylvain Costes: So microgravity.
  Host: The physical effects of the space environment.
  Right?
  Sylvain Costes: That's right.
  Host: Right, okay.
  So you just mentioned GeneLab.
  What is that?
  Sylvain Costes: I'm the Project Manager now  for GeneLab.
  And so let me tell you a bit about GeneLab,  because it's a project that started about
  four years ago, roughly.
  The idea, which is I think very good, is that  NASA should be the custodian of the knowledge
  of how life gets impacted in space.
  And so, there are a lot of studies that have  been going on for 20, 30 years under the sponsorship
  of NASA.
  Host: Definitely.
  We've got a big biosciences division here.
  Sylvain Costes: Absolutely.
  And so, there's a lot of scattered information  here and there.
  I think we're lucky to live in a time where  now we have this new technology called omics.
  And so the omics are -- They're trying to  interpret the slight different changes in
  your gene sequencing with respect to some  risk to your health.
  That's one omics that's exploding right now  in the world.
  But there's other omics that have been going  on for a while, one of them is called transcriptomic,
  which is 90 percent of the data in GeneLab  are transcriptomic data.
  There it's the idea of looking at the RNA  expression in tissues or in microbes or in
  anything we're looking at, any sample coming  from the space station or from the space shuttle
  if they have been analyzed for omics data  up into our repository.
  So GeneLab is that big repository of information.
  Host: Okay, right.
  GeneLab is a database.
  Sylvain Costes: It's a database, but it's  going to be more than a database.
  This was the original thought for it.
  Basically, let's store all this information  to one local place.
  And so, we've been very active in either identifying  legacy dataset that should be in GeneLab from
  the get go from the past.
  We're also very active with any new omics  being produced on the ISS, to make sure that
  those data comes into our repository.
  We're not only looking at one type of omics.
  We're looking at many different omics.
  There's something else called proteomics,  which is protein profile, epigenetic, which
  is how your DNA gets decorated by specific  molecules that changes the expression profile
  of those molecules.
  All these omics techniques are coming to us,  and we're working very actively in identifying
  what's been already produced in the world.
  The idea is to become like the custodian of  knowledge and catering this information to
  the public.
  Host: Okay, cool.
  Let's review.
  Omics is this big area that it could be proteomics,  genomics?
  Sylvain Costes: Absolutely.
  Host: Right, okay.
  So any of these companies that are offering  genetic analyses for the public.
  Sylvain Costes: It's one type of omics.
  Host: Yeah, that's one type of omics.
  All of these basically are ways to study what  our DNA is producing or what any organisms,
  cells, are doing with their DNA.
  Is it correct that that's what can be influenced  by the space environment?
  Sylvain Costes: Absolutely.
  I think if you go back about life in space,  there's really two big questions that we need
  to address.
  One is really how microgravity confinement,  ionizing radiation can affect living entities.
  Here, that question is important with respect  to the astronauts, because we want to make
  sure they're going to be healthy in the long  run.
  Host: Yeah.
  Sylvain Costes: So that's one big question.
  We believe that in addition to the battery  of tests you can do on an astronaut like blood
  samples, pulse, EKG, whatever, you have other  tools, molecular tools, that we can address
  by using animal models.
  Because the problem with omics is typically  you have to sacrifice the animal to get the
  information.
  Host: I see.
  Sylvain Costes: For a mouse, we're going to  get the liver, we're going to get the brain,
  we're going to get the bones, and we can then  run omics on those guys.
  Host: Okay.
  So to see what impact microgravity or radiation  is having on the body?
  Sylvain Costes: On a body that is close to  us.
  Mammals are great, but there's also effort  on drosophila, which is insect.
  Host: The fruit flies.
  Sylvain Costes: Fruit flies.
  You also have C. elegans.
  So there's a variety of animal models we can  use.
  There is another question that GeneLab is  also helping answering in terms of the information
  we're putting into the database.
  It's more understanding the way an ecosystem  is modified by space.
  And so, here you can imagine microbes.
  We talk about microbes being found on the  walls of the space station.
  Host: Yeah, I've seen that.
  Sylvain Costes: These kinds of things would  be addressable with omics, but you're more
  interesting in seeing what kind of maybe new  species or how a strain can deviate from its
  original genomic makeup by being in space  for a long period of time.
  It's also helpful for the client, for instance,  understanding the kind of stress you put on
  an ecosystem, like plants.
  Host: Yeah.
  Sylvain Costes: Then you may be able to optimize  how a plant grows on Mars or in the space
  station.
  You see, you can either look at the ecosystem  side or you can look at the human health side.
  Host: Yeah.
  Sylvain Costes: And so, those two things are  coming together in GeneLab which is interesting.
  Host: That's very interesting.
  That's what I had just realized as you were  talking; you can look at the effect of space
  on an individual, and then all the way up  to the ecosystem scale.
  Sylvain Costes: Exactly.
  Host: That's pretty awesome.
  Sylvain Costes: Right.
  Host: Okay, so these studies are going on  already.
  And then GeneLab collects all that data that  these experiments are producing, is that it?
  Sylvain Costes: Yeah, so there's different  ways that I can make their way in GeneLab.
  One thing, as I mentioned earlier, was we  talk about legacy data.
  Before GeneLab existed, people were already  gathering some omics.
  Having said that, the omics have changed a  lot over the past 10 years.
  So the legacy data typically have some kind  of technology for transcriptomics that we
  don't use as much anymore.
  Like we could microwave, which is the old  way of looking at RNA labels, gene expression
  labels.
  Since then, now we have RNA sequencing, which  is a better technique.
  As we go to new omics, we have much larger  datasets.
  So the repository is getting bigger as the  big data is coming down the pipe.
  Host: Yeah, totally.
  Sylvain Costes: That's one way.
  But the other aspect of GeneLab is to really  work actively with investigators and collaborators
  to generate new data.
  And so we work with PI to have their funding  from NASA to fly animal models, plant, microbes,
  in the space station.
  And we help them maybe get more information  from their samples and make sure that all
  their omics go in the database at the end.
  Host: This is the side that I know a little  bit about from working at Ames.
  Our bioscience department, they work with  researchers at other institutions.
  Right?
  Sylvain Costes: Right.
  Host: Who want to fly an experiment to space  to do their science.
  That's what you're talking about.
  Right?
  Sylvain Costes: Absolutely.
  Host: We'll help them carry out that experiment,  and then also we get to use the data.
  Sylvain Costes: Absolutely.
  There is that aspect of NASA Ames where an  investigator will work with a principal investigator
  that got funding to actually fly on the ISS  specific mission and specific experiment.
  Part of our work is also there.
  I think there's something new about GeneLab  that as the new project manager I'm trying
  to push for is I really think that GeneLab  should be serving three different communities.
  The data repository by itself, that data really  talks to the specialists, the bioinformatician
  that can go in there and download the data,  work with the data, and interpret the data.
  Host: Specialists, yeah.
  Sylvain Costes: Very, very specialized people.
  Host: Yeah.
  Sylvain Costes: Scientists.
  But then you have another group which is the  scientists in general, which they don't know
  how to do the bioinformatics, but they know  how to ask the right question.
  Host: Yeah.
  Sylvain Costes: And so, we want to provide  tools for them to be able to access the information
  without having to do all these very tedious  and slow work.
  Some of the repository data are now being  used to be processed to generate a new level
  of data that we would call higher order data  that can be interpreted.
  From there, for instance, the idea would be  is there a signature of cancer in some liver
  samples that I got from the space station.
  A specialist on cancer, but not a specialist  in bioinformatics, can ask this question by
  being provided the right information.
  Host: I see.
  Also, that means they're not doing a brand  new experiment.
  They're using data that exists.
  Sylvain Costes: Exactly.
  Host: Cool.
  Sylvain Costes: And so now you can think of  this -- It's the same data, but they've already
  been preprocessed by us, and then they are  now -- There's a bigger emphasis on tools
  to visualize this information.
  And so, we're still working with this with  an investigator.
  The idea would be to really have, at the end,  even a higher-level type of information that
  would be very succinct but very simple to  access.
  With a few clicks, someone could go in there  and ask for their favorite gene.
  So is P53 modify in space.
  And then you could ask to look at all the  mouse data, or you could say, "Okay, I want
  mouse and drosophila."
  Host: Yeah.
  Sylvain Costes: This now talks to not only  scientists, but really even high school students
  can do these kind of questions.
  Host: Really?
  Sylvain Costes: Yeah, we had a GeneLab for  high school.
  Liz Blaber was the PI who actually organized  this.
  It was very successful.
  Host: Awesome.
  Sylvain Costes: High school students can make  sense out of this data with the right guidance,
  so it's possible.
  Host: Wow, that's impressive.
  That's bioinformatics.
  You're saying high school students are working  on that.
  Sylvain Costes: Absolutely, yeah.
  It's really amazing.
  The new generation is well trained.
  Host: Wow, yeah.
  NASA is getting the next generation ready.
  That's awesome.
  Sylvain Costes: Yeah.
  There were like, what, 20-plus kids that came  here this summer and they spent 3 weeks.
  Host: Wow.
  Sylvain Costes: They worked on the data that  was on the database.
  At the end, they did a presentation and it  was really good.
  Host: That's a good way to spend your summer  as a high school student.
  Sylvain Costes: I agree.
  Host: Not just hanging out at the beach.
  Right?
  You said three communities that GeneLab serves.
  Did we hit all three?
  Sylvain Costes: Yeah.
  Those visualization aspects is really -- you  could have a visualization layer that would
  be fairly sophisticated for still scientist  type of people.
  But then you could really have even a higher-level  visualization that is really simple where
  you can ask very simple questions.
  Anyone who doesn't know science but was curious  about space could say, "Is there any change
  in inflammatory response in space?"
  Host: Okay.
  Sylvain Costes: And so at least on the omics  level, looking at protein and RNA, you could
  extract this kind of information, actually,  and report this information back to the public.
  What we're envisioning is really this multitier  level where you can really, for a specialist,
  you would probably much play with the data  the way they are.
  For the scientist community, you would have  visualization tools and some processing tools
  if you want to do some grinding yourself.
  Host: Okay.
  Crunch the numbers and that data.
  Yeah.
  Sylvain Costes: The system would be, by the  way, on the cloud.
  But then at the end, the very light level  data, which doesn't take much room, is those
  visualization data.
  But then they're very much guided by us, because  we have to make choices in what we want to
  display.
  Host: Right, right.
  Sylvain Costes: To do this, we think that  we will involve the scientific community through
  something – NIH [National Institutes of  Health] uses a similar model called AWG, analysis
  working group.
  The idea is to put together multiple principal  investigator experts in one topic and put
  them together to tease out what will be the  best way to analyze some type of data.
  For instance, we could focus on the rodent  data or you could focus on the microbe data.
  You could imagine different AWG, analysis  working groups, for these different questions.
  Host: Okay, so different groups of scientists  will decide this particular kind of data is
  probably most useful for the community, so  we're going to create some tools to process
  it?
  Sylvain Costes: Some tools or some way of  displaying them.
  Host: Okay.
  Sylvain Costes: How can you make it very,  very easy for anyone to understand what's
  going on.
  What is the right processing pipeline?
  We call them pipelines.
  It's like a bunch of different scripts that  you put together that will take the raw data,
  which are very big, and turn them into a very  small amount of data that is small but very
  meaningful to us.
  You can imagine, Google does the same thing  with their data.
  They have all these very large databases that  they work with.
  But at the end, when you type a keyword for  a specific question you're asking, the system
  is able to point immediately to a webpage  with an actual answer to your question, which
  is remarkable.
  In the background there's a lot of things  happening for this, and there's that huge
  database working for you.
  Host: Are you creating the search engine that  will browse this huge database of biological
  information?
  Sylvain Costes: We're thinking of that.
  It's a bit more difficult for us because when  you think of Google, they really have what
  they call big data, which is a lot of data.
  GeneLab doesn't have big data.
  We have complex data.
  Host: Okay.
  Sylvain Costes: We don't have that many experiments  from space mission.
  If you go on our website right now, you will  find 130-plus studies, and less than half
  of them are actually space missions, and the  other ones are ground studies that mimic what's
  happening in space.
  Host: Okay.
  Simulations?
  Sylvain Costes: Simulation.
  This is the caveat is that we have lots of  data, but they are complex data and they're
  not big data.
  We have very sparse metrics of information.
  And so, there's still some question about  how you're going to go about those data.
  And so, that's really where working with the  scientific community will help us figure out
  what are the best pipelines with these specific  constraints in mind, which is an additional
  challenge.
  But I think the technology and I think machine  learning may be helpful there.
  Host: Really?
  Machine learning is part of this?
  Sylvain Costes: We're thinking of that, too.
  Host: Interesting.
  Sylvain Costes: Because there might be some  clever way of interpreting those sparse metrics
  that we're dealing with.
  There are a lot of things still that are undefined  in the scientific community.
  I think GeneLab is really at the cutting edge  of this information.
  It's super exciting, but it's a challenge.
  I think it's a visionary approach to have  created GeneLab.
  But any visionary approach also brings a lot  of challenges that needs to be dealt with.
  Host: Yeah, but NASA is all about challenges  and taking them on.
  Sylvain Costes: Absolutely.
  That's why we're here. Right?
  Host: Right.
  Exactly.
  I wanted to ask you.
  You've spoken about how GeneLab will be accessible  to different levels of expertise.
  Is it also open to anyone to go browse and  look at?
  Sylvain Costes: Absolutely.
  The intent is to have these different tier  levels.
  Currently the current version we have is 1.0,  and we're moving to 2.0.
  1.0 is very much a repository where you can  just download the data.
  The version 2.0 would have -- And it's public,  sorry.
  Anyone can go in there.
  There is no restriction.
  Host: Amazing.
  Sylvain Costes: A high school student can  download the data on his or her hard drive
  and play with them if they want to.
  There are a lot of free tools out there that  you can do that, really.
  But 2.0 is going to have more interesting  things coming down the pipe.
  We have now a workspace so people can log  in and actually see all your data that you
  want to add to the current GeneLab data.
  You can bring your own data.
  If you want to do a comparison, for instance,  with your favorite experiment and some space
  samples, you can do it inside the system.
  The other thing is 2.0, as we move on, we'll  be having move and more tools that you can
  use to process some samples and do some analysis.
  Host: Does that mean like a cancer researcher  could take their own data from their own lab
  and compare, I don't know, genetic changes  to what we see in space?
  Sylvain Costes: Absolutely.
  That's exactly the idea.
  You could have someone who's a specialist  in breast cancer.
  We know for instance breast is a very sensitive  tissue for radiation.
  It's a classic model.
  It would not be a bad idea to look at the  -- A lot of the animals that were flown on
  the ISS and in the space shuttle are female  mice.
  For many reasons, it's easier to work with  female than male.
  Typically males tend to fight in the same  cage, for a start.
  So we can't put as many males as we can put  female in a cage.
  Host: Yeah.
  Sylvain Costes: And so, the female have the  mammary gland, which is another very interesting
  tissue because they're very sensitive to radiation.
  You could look at cancer incidents through  radiation.
  It would be an interesting question to look  at specific early onset of cancer, a signature
  at the genomic level, and then compare it  to the space station data that's on GeneLab,
  for instance.
  I don't think anyone has done that yet.
  Host: Interesting.
  All right, and GeneLab would make that comparison  possible.
  Sylvain Costes: Should be, if we have -- Having  said that, we need to first have some mammary
  gland data in GeneLab for ISS or space shuttle.
  They might be out there somewhere.
  A lot of the data are being generated by the  PI as we're talking.
  So there's more that are going to come along.
  Hopefully some of this information will be  there as we -- The longer we wait, the more
  information that will be there.
  Host: Right, that's going to grow with time.
  Sylvain Costes: Exactly.
  Host: Yeah, cool.
  So do you guys just receive data, or do you  ever work with the samples that come back
  from the space station?
  Because there are biological experiments happening  up there.
  Right?
  Sylvain Costes: It's a great question.
  Actually we do both.
  The majority of the work is obviously on taking  other people's data.
  But NASA has recognized that some samples  may not be taken by any PI, and so it would
  be a bit of a waste.
  Host: They may not be used by -- ?
  Sylvain Costes: Right.
  And so GeneLab has come up with a prioritization  of samples that we think are very important.
  One of the strategies would be that if we  can really focus our attention to specific
  tissue on a regular basis, then we'll have  a very clear characterization of this tissue.
  As time goes by, we'll have multiple time  points in space.
  So a long duration versus a short duration,  looking always at a same tissue in the same
  type of animals, then we'll be able to see  how the time dependencies are showing up.
  To do this, we have what we call the sample  processing lab, which is a small group in
  GeneLab that either work with other principal  investigators when they need help to process
  samples.
  But also there's something called tissue sharing  agreement where we can get some tissue from
  the ISS that are not clamed by anyone else.
  There's a list of tissue that we'd rather  see coming in through this prioritization.
  Host: What would be an example?
  What would be tissues you're interested in?
  Sylvain Costes: The one we've been looking  at a lot is liver.
  The reason no one wanted to look at liver  is because it's not a tissue that's been showing
  very much response.
  Having said that, we actually now have a publication  being prepared on that topic showing that
  actually there is some real changes in the  liver in space.
  Host: Really?
  Sylvain Costes: Which is surprising.
  There was one study before that had suggested  there was a change in a longer duration from
  space shuttle samples.
  And now the study we're preparing actually  is showing that on the ISS as well, the same
  strain of mice called C57 are showing some  kind of a change in the liver over a 30-day
  course in space.
  Host: That could be important for human astronauts.
  Sylvain Costes: Absolutely.
  The big question is -- The problem with animal  system is that you have to remember that we
  work with one strain, which means that all  the data is coming from one single strain,
  which is the equivalent of -- When you work  on one strain of mice, you're looking at identical
  twins, if you want.
  Host: Yeah.
  Right.
  Sylvain Costes: So you have no idea of how  genetic variance is affecting this response.
  Host: Okay.
  Sylvain Costes: What you see in one strand  may not be seen in another strand.
  Host: Yeah.
  Sylvain Costes: And so that's one of the big  challenges with the animal work.
  Host: I see.
  Sylvain Costes: That's a caveat, and that's  why insects are pretty cool, because with
  insects you can actually have a bunch of different  genetic backgrounds in one experiment.
  Host: More easily, more of them.
  They're smaller.
  Sylvain Costes: That's right.
  So you see, this is the art of science.
  It's like how do you use each model to their  best -- Are you optimizing the usage of these
  animals?
  Host: Yeah, put them to their best use.
  Yeah.
  Sylvain Costes: Right.
  Rodents are great because they're very close  to us genetically, but that's the limitation.
  Insects are great because like Drosophila,  you can have a huge spectrum of genetic differences
  and you can have many of them, but then they're  much further away from us than a mammal.
  Host: Yeah.
  Right.
  Sylvain Costes: And then we put all this information  together.
  The idea, again, as we move forward with technology,  we expect to see some new algorithm that will
  be able to make these bridges between the  different species and come up with some real
  response from space and understand better  how space affects us.
  Host: Yeah. Right. Okay.
  So take the results from those studies happening  in space, look at the data in a broad way
  and draw conclusions?
  Sylvain Costes: Absolutely.
  Host: Okay.
  That's super interesting.
  Sylvain Costes: It is. Right?
  Host: Yeah, cool.
  Sylvain Costes: 10 years from now, we can  go back and see what we discover.
  But I think there's going to be a lot of discovery  by the scientific community through this database.
  Host: Yeah, no doubt.
  The other thing I love about the space station  biology experiments is it's not just for space
  applications.
  But everything we learn about human health  from that can be applied down here potentially.
  Sylvain Costes: Absolutely.
  That's a great point, thanks for raising it.
  Because we're discovering this as we -- One  of the things we're doing right now at GeneLab
  is as we are generating those preprocess file  for opening the door to a bigger community
  that don't need to do all this processing  that we can provide to them, we're discovering
  some confronting factors in the sample.
  For instance, if you modify the carbon dioxide  level in the cage of an animal -- I don't
  know if you know that, but carbon dioxide  levels are different in space because it tends
  to be higher.
  Host: Really?
  Sylvain Costes: For the longest time, we thought  that there was no impact because they were
  still pretty low level.
  Now with the GeneLab data, what we're discovering  is that when you do a ground control and you
  increase the carbon dioxide to the level that  you have in space on the space station, we
  do see some [unintelligible] natures in the  gene.
  Host: It has an impact then.
  Sylvain Costes: It has an impact.
  Now again, you have to be careful.
  RNA level is just one very small piece of  the puzzle.
  You may have a change at the RNA level but  not at the protein level, which is what's
  more relevant, I would say, physiologically.
  It's like the final signal is turning to an  actual protein.
  There are caveats in everything we do.
  But it's really telling us that, yeah, those  carbon dioxide have an impact.
  It's not maybe picked up -- Physiological  changes are maybe not picked up by it.
  Host: Okay, yeah.
  Sylvain Costes: But those very sensitive molecular  tools can pick up those features.
  Host: Right.
  So that's an example where GeneLab is allowing  you to discover that it's very complex, the
  interactions between environment and DNA and  proteins produced.
  Sylvain Costes: Exactly.
  Host: And you're teasing that apart.
  Right?
  Sylvain Costes: Right.
  Because back to the carbon dioxide example.
  You could imagine a situation on earth where  we are exposed to a high level of carbon dioxide.
  No one would ever study this stuff because  no one would ever think of that.
  But it turns out that [this] is clearly putting  their fingers on one thing that maybe suggesting
  more and more studies even by other investigators.
  What are those signatures?
  What are those changes in the RNA will do  on the long term?
  Is there a situation on earth where you get  a low carbon dioxide level and they should
  be concerned about it?
  It is really going much more beyond space.
  People being bedridden for like a month is  the equivalent of being in microgravity [as]
  one of the classic models.
  Microgravity can tell us about bone loss and  things like this.
  Host: That's right.
  Sylvain Costes: There are a lot of parallels  between what's happening in space.
  You can think of space as an accelerator of  aging, in a way.
  That's the way I look at it often.
  And so I think everything we're discovering  on those data will be relevant for humans
  on earth as well.
  Host: Fascinating.
  I like the way earlier you described NASA  as the custodian of data about biology and
  physiology and health in space.
  It sounds like you're making that easier to  use and accessible to more people.
  Sylvain Costes: That's what we're trying to  do.
  Host: Wonderful.
  Excellent.
  This was super fascinating.
  I think for a lot of people it's surprising,  first of all, that NASA does biology, and
  then that they can take a look at this data  and maybe use it themselves in their labs
  or at home.
  So thank you for sharing that with us.
  Sylvain Costes: No, thank you for highlighting  GeneLab.
  Anyone who is listening, feel free to come  to genelab.nasa.gov.
  Host: Awesome.
  Also online, we are @NASAAmes.
  We can take any questions for Sylvain about  GeneLab with the hashtag #NASASiliconValley.
  Thanks again for being here.
  Sylvain Costes: Thank you very much.
     
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